Publications

TLmutation: Predicting the Effects of Mutations Using Transfer Learning

The Journal of Physical Chemistry B, 124(19): 3845-3854, 2020
Shamsi, Zahra and Chan, Matthew and Shukla, Diwakar
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How does evolution design functional free energy landscapes of proteins? A case study on the emergence of regulation in the Cyclin Dependent Kinase family

Molecular Systems Design & Engineering, 5(1): 392-400, 2020
Zahra Shamsi and Diwakar Shukla
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FingerprintContacts: Predicting Alternative Conformations of Proteins from Coevolution

The Journal of Physical Chemistry B, 124(18): 3605-3615, 2020
Jiangyan Feng and Diwakar Shukla
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Structural consequences of multisite phosphorylation in the BAK1 kinase domain

Biophysical journal, 118(3): 698-707, 2020
Moffett, Alexander S and Shukla, Diwakar
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Computational microscopy: Revealing molecular mechanisms in plants using molecular dynamics simulations

The Plant Cell, 31(12): tpc.119.tt1219, 2019
Feng, Jiangyan and Chen, Jiming and Selvam, Balaji and Shukla, Diwakar
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Molecular Mechanism of Brassinosteroid Perception by the Plant Growth Receptor BRI1

The Journal of Physical Chemistry B, 124(2): 355-365, 2019
Faisal Aldukhi and Aniket Deb and Chuankai Zhao and Alexander S. Moffett and Diwakar Shukla
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Molecular Basis of the Activation and Dissociation of Dimeric PYL2 Receptor in Abscisic Acid Signaling

bioRxiv: 721761, 2019
Zhao, Chuankai and Shukla, Diwakar
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Structural architecture of a dimeric class C GPCR based on co-trafficking of sweet taste receptor subunits

Journal of Biological Chemistry, 294(13): 4759-4774, 2019
Jihye Park and Balaji Selvam and Keisuke Sanematsu and Noriatsu Shigemura and Diwakar Shukla and Erik Procko
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Ion Gel Dynamic Templates for Large Modulation of Morphology and Charge Transport Properties of Solution-Coated Conjugated Polymer Thin Films

ACS Applied Materials & Interfaces, 11(25): 22561-22574, 2019
Erfan Mohammadi and Chuankai Zhao and Fengjiao Zhang and Ge Qu and Seok-Heon Jung and Qiujie Zhao and Christopher M. Evans and Jin-Kyun Lee and Diwakar Shukla and Ying Diao
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Dewetting Controls Plant Hormone Perception and Initiation of Drought Resistance Signaling

Structure, 27(4): 692-702, 2019
Shukla, Saurabh and Zhao, Chuankai and Shukla, Diwakar
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